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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9098061_9098840_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9098061 - 9098840
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGATTTTTACTT
Flanking Amino Acid:
DFEKSMNRCVVRSVLIKPDV
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
86.8
0.83
0.6
81.3
30.7
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
58.4
0.34
1.6
72.55
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176