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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9099056_9100732_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9099056 - 9100732
Intron Length:
1677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTTA
5'SS Class:
major
3'SS Sequence:
AGCCCATTATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
AAATACTTACAC
Flanking Amino Acid:
KEQQEMLNQLLPLIILSFQN
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1.1
73.5
33.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
58.6
0.19
1
56
38.4
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
48.1
-0.1
1.9
57.73
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018261
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039547
9088721 - 9100896
12176