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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9104480_9105066_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9104480 - 9105066
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAATT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTTCTTAAAG
Flanking Amino Acid:
KVLQRSSVLQVSVLQSATDP
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.2
75.7
40.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
81
0.7
1
82.3
27
Minor 5ss
43.9
-0.7
3.2
66.8
44.1
Minor BPS
77.9
0.74
1.4
80.39
35.1

Associated Gene:

Gene:
PDE12
Ensembl Gene ID:
ENSAPLG00000026362
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033145
9103238 - 9106227
2990