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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9114427_9114917_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9114427 - 9114917
Intron Length:
491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTATTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
AATTCAATAACG
Flanking Amino Acid:
QEAAEELQKMLQEDELRDAV
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
80.3
32.2
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
82.3
0.73
0.8
83.2
27
Minor 5ss
38.1
-1.3
3.5
54.6
45
Minor BPS
55.5
0.03
2
65.96
40.8

Associated Gene:

Gene:
ARF4
Ensembl Gene ID:
ENSAPLG00000017767
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033579
9113044 - 9122028
8985