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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9114990_9115565_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9114990 - 9115565
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTCAAAACT
Flanking Amino Acid:
LWRHYFQNTQGLIFVVDSND
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
79.9
0.67
0.9
73.7
35.9
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
64.1
0.52
1.9
88.42
36.6

Associated Gene:

Gene:
ARF4
Ensembl Gene ID:
ENSAPLG00000017767
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033579
9113044 - 9122028
8985