About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9116300_9121961_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9116300 - 9121961
Intron Length:
5662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTGTGAACT
Flanking Amino Acid:
FGKKQMRILMVGLDAAGKTT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.4
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.5
0.71
0.8
77.3
31.5
Minor 5ss
30
-2.3
3.5
34
41.8
Minor BPS
57.4
0.31
2.2
81.41
40

Associated Gene:

Gene:
ARF4
Ensembl Gene ID:
ENSAPLG00000017767
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033579
9113044 - 9122028
8985