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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9125489_9126013_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9125489 - 9126013
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTACATTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
AATTTCTTATTG
Flanking Amino Acid:
DLVLKLKNKLLQADREHLPV
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76
0.58
1
69.3
41.2
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
59.3
0.15
1.6
62.43
39.9

Associated Gene:

Gene:
DENND6A
Ensembl Gene ID:
ENSAPLG00000016704
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046204
9125357 - 9150245
24889