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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9127662_9128148_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9127662 - 9128148
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCATTTCT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTGTTTTAACA
Flanking Amino Acid:
GLKGDWIGLYRHFLKSPNFD
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
74.3
37
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.6
0.62
1
73.3
40.9
Minor 5ss
38.3
-1.3
2.8
51.9
44.5
Minor BPS
69.8
0.62
1.3
75.16
36.6

Associated Gene:

Gene:
DENND6A
Ensembl Gene ID:
ENSAPLG00000016704
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046204
9125357 - 9150245
24889