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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9134018_9136998_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9134018 - 9136998
Intron Length:
2981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAACA
Flanking Amino Acid:
FKEYTTRTQAPPSVILGVTN
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
74.5
37.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.4
0.71
0.8
74
41
Minor 5ss
36.9
-1.5
2.7
46.9
41.8
Minor BPS
60.7
0.33
1.6
69.76
36.7

Associated Gene:

Gene:
DENND6A
Ensembl Gene ID:
ENSAPLG00000016704
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046204
9125357 - 9150245
24889