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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9140033_9141082_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9140033 - 9141082
Intron Length:
1050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGCTA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAC
U12 Branch Point Sequence:
TTTTTCTTTAAG
Flanking Amino Acid:
FEKSEAFLEAVCSDVDRWPP
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.5
43.6
Major BPS
69.3
0.48
1.1
67
39.5
Major PPT
85.8
0.8
0.9
91.3
21
Minor 5ss
33
-1.9
3.6
47.1
48.3
Minor BPS
62.2
0.24
1.8
72.26
40.2

Associated Gene:

Gene:
DENND6A
Ensembl Gene ID:
ENSAPLG00000016704
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046204
9125357 - 9150245
24889