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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9141189_9141552_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9141189 - 9141552
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTATTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGTTTTGTAACT
Flanking Amino Acid:
KSLKRGYFQKSLVLISKLPY
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84.7
0.78
0.8
77.1
35.8
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
DENND6A
Ensembl Gene ID:
ENSAPLG00000016704
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046204
9125357 - 9150245
24889