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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9191809_9197238_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9191809 - 9197238
Intron Length:
5430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TGGATCATGATG
Flanking Amino Acid:
GVDVTENTRKVTHGCIVSTI
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
45.6
-0.4
1.6
48.18
39.5

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000026756
9158835 - 9238718
79884
ENSAPLT00000017347
9158835 - 9239829
80995