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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9197312_9198615_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9197312 - 9198615
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTTCTTTTACA
Flanking Amino Acid:
PDGMEARLRSDVIHAPLPSP
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
95.6
1.03
0.5
91.4
20.1
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
77.6
0.86
1.5
87.29
30.4

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000026756
9158835 - 9238718
79884
ENSAPLT00000017347
9158835 - 9239829
80995
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995