About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9199666_9201030_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9199666 - 9201030
Intron Length:
1365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTGCTCTCATCA
Flanking Amino Acid:
ELFQLSQYLQEALHREQMLE
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
67.9
0.4
0.8
61.6
33.5
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
46.9
-0.2
1.8
56.37
43

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000026756
9158835 - 9238718
79884
ENSAPLT00000017347
9158835 - 9239829
80995
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995