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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9201127_9201458_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9201127 - 9201458
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGGCA
5'SS Class:
major
3'SS Sequence:
ACGTCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTAATATTAATG
Flanking Amino Acid:
TQEASDTSWQALIDEDRLLS
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.7
39.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
71.3
0.48
0.9
62.5
39.1
Minor 5ss
28.5
-2.5
3.6
39.4
46
Minor BPS
49.3
-0.1
1.7
53.63
41.5

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000026756
9158835 - 9238718
79884
ENSAPLT00000017347
9158835 - 9239829
80995
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995