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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9202517_9203537_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9202517 - 9203537
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCTAG
5'SS Class:
major
3'SS Sequence:
TTCTATCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTGTAATT
Flanking Amino Acid:
EVVRKLSEVERSLSNTEDEC
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.1
60.4
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
80.1
31.7
Minor 5ss
49.4
-0
2.5
64.1
47.4
Minor BPS
56.3
0.28
2
79.53
37.3

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000026756
9158835 - 9238718
79884
ENSAPLT00000017347
9158835 - 9239829
80995
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995