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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9219948_9225543_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9219948 - 9225543
Intron Length:
5596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCGCTTTCATT
Flanking Amino Acid:
EPIAKVALLKALLEEERRAY
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
82.3
0.73
0.7
77.6
29.8
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
56
0.27
1.9
74.65
43.4

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995