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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9235348_9239739_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9235348 - 9239739
Intron Length:
4392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TCTTTCCACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
LKLLQEKGNNRQWPWMPVMA
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
77.9
0.63
0.8
73.1
30.8
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
SLMAP
Ensembl Gene ID:
ENSAPLG00000008635
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027094
9158835 - 9239829
80995
ENSAPLT00000017347
9158835 - 9239829
80995
ENSAPLT00000009071
9158835 - 9239829
80995
ENSAPLT00000028758
9158835 - 9239829
80995