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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9304050_9304907_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9304050 - 9304907
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CACTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
ATATACTTAATT
Flanking Amino Acid:
QADDWLGVPQVITPEEIIHP
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
79.4
0.73
1
80.1
32
Major PPT
76.8
0.6
0.9
72.8
37.1
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
73.7
0.82
1.4
84.69
35.3

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036841
9281290 - 9348717
67428
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254