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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9308473_9309123_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9308473 - 9309123
Intron Length:
651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAC
U12 Branch Point Sequence:
TGGGCCAGAGCT
Flanking Amino Acid:
YMPKVTGPHKVSVLFAGQHI
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
57.5
0.19
1.1
48.8
38.1
Major PPT
82.3
0.73
0.8
73.7
36.9
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
44.3
-0.3
2
62.87
46.5

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254
ENSAPLT00000036841
9281290 - 9348717
67428
ENSAPLT00000031964
9281290 - 9348717
67428