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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9318313_9320632_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9318313 - 9320632
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCCAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
AATTCTCCAACT
Flanking Amino Acid:
HTVRYTPIQQGPMKVLVTYG
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
63.7
0.31
1
57.3
38.3
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
56.1
0.27
1.9
77.04
38.9

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036841
9281290 - 9348717
67428
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254