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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9322951_9323183_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9322951 - 9323183
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
GGTTCTTGAAGT
Flanking Amino Acid:
KVFGPGVEGKDVFREATTEF
Intron Amino Acid Position:
1334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
83.1
0.74
0.9
77.3
37
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
57.8
0.32
1.8
74.46
42.1

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036841
9281290 - 9348717
67428
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254