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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9323908_9324157_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9323908 - 9324157
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTAAG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
ATTCTAACAATC
Flanking Amino Acid:
NQPNAFSVVTRGAGIGGLGI
Intron Amino Acid Position:
1446

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
69
43.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
39.5
-1.2
2.9
50.7
45.8
Minor BPS
43.2
-0.5
1.9
56.77
35

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254
ENSAPLT00000036841
9281290 - 9348717
67428