About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9326574_9327405_F


Intron Information:

Intron Rank:
26

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
9326574 - 9327405

Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTTTGAACT

5'SS Class:
major

3'SS Sequence:
GTTGCTTTTTTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTAAT

U12 Branch Point Sequence:
CAGCTGAGAATT

Flanking Amino Acid:
KGDPKGDTATGIVEPVNVVD

Intron Amino Acid Position:
1585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.7
0.53
1.2
72
37.3

Major BPS
99.5
1.23
0.5
98.2
4.2

Major PPT
79.6
0.67
0.8
77.4
36.9

Minor 5ss
38.6
-1.3
2.7
51
45.1

Minor BPS
36.8
-0.9
2.1
47.73
38.8

Associated Gene:

Gene:
FLNB

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9268464 - 9348717
80254

9281290 - 9348717
67428

9281290 - 9348717
67428

9281290 - 9348717
67428