About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9333046_9333776_F


Intron Information:

Intron Rank:
31

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9333046 - 9333776

Intron Length:
731

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTACACAAT

5'SS Class:
major

3'SS Sequence:
TTGCTTCCTGCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CCTTCAT

U12 Branch Point Sequence:
TCATCTGTGACG

Flanking Amino Acid:
GAPPAGFRPWVTEEAYVPVG

Intron Amino Acid Position:
1850

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.3
0.31
1.1
62.3
43.9

Major BPS
75
0.62
1.1
77.2
36

Major PPT
82.8
0.74
0.8
77.6
31.2

Minor 5ss
38.9
-1.2
3.3
48
47.9

Minor BPS
49.5
-0.1
2.1
58.55
43.8

Associated Gene:

Gene:
FLNB

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9268464 - 9348717
80254

9281290 - 9348717
67428

9281290 - 9348717
67428

9281290 - 9348717
67428