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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9338916_9339239_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9338916 - 9339239
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GTCGTACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TCGTACTTACAG
Flanking Amino Acid:
STKFADEHIPGSPFTVKISG
Intron Amino Acid Position:
2204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
72.7
44.5
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
73.5
0.53
1
65.3
40.3
Minor 5ss
38.8
-1.3
2.8
48.8
47
Minor BPS
47.5
-0.3
2
53.27
47.1

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254
ENSAPLT00000036841
9281290 - 9348717
67428