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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9339363_9339930_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9339363 - 9339930
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATTCTATT
Flanking Amino Acid:
SICDLNLKIPEIDCADMTAQ
Intron Amino Acid Position:
2245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.6
0.67
1
80.5
36.9
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
46.8
-0.1
2
68.68
42.5

Associated Gene:

Gene:
FLNB
Ensembl Gene ID:
ENSAPLG00000009572
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031964
9281290 - 9348717
67428
ENSAPLT00000029110
9281290 - 9348717
67428
ENSAPLT00000010001
9281290 - 9348717
67428
ENSAPLT00000047129
9268464 - 9348717
80254
ENSAPLT00000036841
9281290 - 9348717
67428