Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9356889_9357608_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9356889 - 9357608

Intron Length:

720

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACAGC

5'SS Class:

major

3'SS Sequence:

TTGCCCCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGGAA

U12 Branch Point Sequence:

GTTTGTGGAACC

Flanking Amino Acid:

VKNSTSCPYDRIVVSGEQLS

Intron Amino Acid Position:

233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

69.5

41.5

Major BPS

48.8

-0

1.5

49.1

46.3

Major PPT

79.8

0.67

0.8

73.5

31.4

Minor 5ss

39.1

-1.2

52.1

44.7

Minor BPS

45.1

-0.3

2.4

63.58

42.1

Associated Gene:

Gene:

DNASE1L3

Ensembl Gene ID:

ENSAPLG00000009829

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010265

9356419 - 9360755

4337