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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9357767_9358313_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9357767 - 9358313
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGCT
5'SS Class:
major
3'SS Sequence:
TCCTGCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TGCCTTTGAAAT
Flanking Amino Acid:
LDVRQRWDTKNFVFMGDFNA
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.2
70.9
39.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
79.3
0.66
0.8
72.7
32.1
Minor 5ss
30.3
-2.3
3.3
42
44.7
Minor BPS
48.9
-0
1.5
63.94
40.1

Associated Gene:

Gene:
DNASE1L3
Ensembl Gene ID:
ENSAPLG00000009829
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010265
9356419 - 9360755
4337