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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9359549_9360623_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9359549 - 9360623
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TAACCCTCCAGG
Flanking Amino Acid:
RPEVVDVVVKIIARCDIMLL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
72
0.55
1
71.8
31.4
Major PPT
85.4
0.8
0.8
80.4
31.6
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
42.1
-0.7
2.2
47.45
45

Associated Gene:

Gene:
DNASE1L3
Ensembl Gene ID:
ENSAPLG00000009829
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010265
9356419 - 9360755
4337