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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9412488_9413148_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9412488 - 9413148
Intron Length:
661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTGACTCTAATT
Flanking Amino Acid:
RQHRKEEKMKSHKLEEEFEW
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
59.5
0.38
1.7
77.17
39.7

Associated Gene:

Gene:
IP6K2
Ensembl Gene ID:
ENSAPLG00000010393
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010826
9411532 - 9416660
5129