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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9413325_9414609_F

Intron Information:

Intron Rank:
3
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
9413325 - 9414609
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CTTAACTATCCAG|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TGTTCCTTAACT
Flanking Amino Acid:
KENAKHRNQYKFILLENLTS
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.7
0.06
1.2
57.8
41.9
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
71.9
0.49
1
62.5
43
Minor 5ss
96.3
1.56
0.7
91.7
17.5
Minor BPS
94.1
1.47
0.7
101.2
24.9

Associated Gene:

Gene:
IP6K2
Ensembl Gene ID:
ENSAPLG00000010393
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010826
9411532 - 9416660
5129