About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9414786_9416162_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9414786 - 9416162
Intron Length:
1377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TTGAAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTCCTTGAAAC
Flanking Amino Acid:
VIGVRVCGMQVYQAGTGQLM
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
71.1
0.48
1
63.1
42.8
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
56.9
0.2
1.5
67.31
37.4

Associated Gene:

Gene:
IP6K2
Ensembl Gene ID:
ENSAPLG00000010393
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010826
9411532 - 9416660
5129