About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9420938_9432956_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9420938 - 9432956
Intron Length:
12019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAGA
5'SS Class:
major
3'SS Sequence:
TTTATTCACTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTATTCACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
65
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75
0.56
0.9
74.7
35.1
Minor 5ss
31.9
-2.1
3.1
39.5
46.1
Minor BPS
50.5
0.1
2
76.82
40.3

Associated Gene:

Gene:
NCKIPSD
Ensembl Gene ID:
ENSAPLG00000015035
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038713
9420627 - 9466798
46172