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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9445951_9452243_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9445951 - 9452243
Intron Length:
6293

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGCAT
5'SS Class:
major
3'SS Sequence:
TGTCCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
TGACCACTGACT
Flanking Amino Acid:
QILISVVESKDLSSGLPSGQ
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
69.6
42.7
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
83
0.74
0.8
77
31.6
Minor 5ss
38
-1.4
3.4
55.8
48.4
Minor BPS
47.9
-0
2
69.11
40.8

Associated Gene:

Gene:
NCKIPSD
Ensembl Gene ID:
ENSAPLG00000015035
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035993
9420627 - 9466798
46172
ENSAPLT00000015677
9444481 - 9465407
20927
ENSAPLT00000038713
9420627 - 9466798
46172