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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9452415_9453542_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9452415 - 9453542
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CTGTGCTGACCA
Flanking Amino Acid:
CYLEELLRILTDADPEVCKK
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
84
0.85
0.9
75
39.9
Major PPT
81.5
0.71
0.8
72.8
37.5
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
46.4
-0.2
2.1
59.56
46.3

Associated Gene:

Gene:
NCKIPSD
Ensembl Gene ID:
ENSAPLG00000015035
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038713
9420627 - 9466798
46172
ENSAPLT00000035993
9420627 - 9466798
46172
ENSAPLT00000015677
9444481 - 9465407
20927