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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9454566_9459503_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9454566 - 9459503
Intron Length:
4938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAAGAATTAATG
Flanking Amino Acid:
LARDMQTHTQDHQKMCYSAL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
68.4
38.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.5
0.75
0.9
77.3
37
Minor 5ss
32.7
-2
3
41
45.6
Minor BPS
44.4
-0.5
1.8
44.77
40.7

Associated Gene:

Gene:
NCKIPSD
Ensembl Gene ID:
ENSAPLG00000015035
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038713
9420627 - 9466798
46172
ENSAPLT00000035993
9420627 - 9466798
46172
ENSAPLT00000015677
9444481 - 9465407
20927