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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9460999_9462901_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9460999 - 9462901
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTTG
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTGTGCTGAACG
Flanking Amino Acid:
VLLAFNLHIPVPEHSVIMTT
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.2
70.9
41.9
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
77.3
0.62
0.8
70.5
35.6
Minor 5ss
38.8
-1.3
3
49.5
46.8
Minor BPS
58.7
0.13
2
68.2
45.1

Associated Gene:

Gene:
NCKIPSD
Ensembl Gene ID:
ENSAPLG00000015035
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035993
9420627 - 9466798
46172
ENSAPLT00000015677
9444481 - 9465407
20927
ENSAPLT00000038713
9420627 - 9466798
46172