Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9462995_9464466_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9462995 - 9464466

Intron Length:

1472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

CTGCCACCTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTTAAC

U12 Branch Point Sequence:

CGTGCCTTAACG

Flanking Amino Acid:

EKLLLLLNRGDDPVCIFKHQ

Intron Amino Acid Position:

573

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

64.7

0.37

1.1

67.2

35.2

Major PPT

69.4

0.44

0.9

58.9

37.3

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

69.6

0.48

1.6

67.9

45.5

Associated Gene:

Gene:

NCKIPSD

Ensembl Gene ID:

ENSAPLG00000015035

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038713

9420627 - 9466798

46172

ENSAPLT00000035993

9420627 - 9466798

46172

ENSAPLT00000015677

9444481 - 9465407

20927