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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9500116_9501109_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9500116 - 9501109
Intron Length:
994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
CGTTTTGTAACC
Flanking Amino Acid:
GYFVEHLAFKGTKKRSCAAF
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
82.5
0.73
0.7
81.2
30.9
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
53.1
0.08
2
65.82
40.4

Associated Gene:

Gene:
UQCRC1
Ensembl Gene ID:
ENSAPLG00000001974
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001974
9498547 - 9507145
8599