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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9504092_9505120_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9504092 - 9505120
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTAACAGCATT
Flanking Amino Acid:
DDMMFCAQGEWMRLCTSTTE
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.3
0.73
0.8
76.8
31.9
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
42
-0.5
2.2
67.92
42.5

Associated Gene:

Gene:
UQCRC1
Ensembl Gene ID:
ENSAPLG00000001974
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001974
9498547 - 9507145
8599