About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9505207_9505690_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9505207 - 9505690
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTCCT
5'SS Class:
major
3'SS Sequence:
CTTCAACACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ATATCTTCAACA
Flanking Amino Acid:
LRNAMVAQLDGTTPVCETIG
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
68.2
42.6
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
60.7
0.24
0.9
51.9
37
Minor 5ss
35.9
-1.6
3.2
48.1
42.7
Minor BPS
68.3
0.57
1.5
75.19
35.8

Associated Gene:

Gene:
UQCRC1
Ensembl Gene ID:
ENSAPLG00000001974
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001974
9498547 - 9507145
8599