Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9519366_9519705_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9519366 - 9519705

Intron Length:

340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCCCGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCGGAC

U12 Branch Point Sequence:

CTGCCCGGACCC

Flanking Amino Acid:

QGYVLSYTAQGAAQGEERSL

Intron Amino Acid Position:

361

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

42.7

-0.4

1.2

34.3

33.1

Major PPT

72.1

0.5

65.8

35.9

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

41.4

-0.6

2.3

52.22

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044325

9517390 - 9532204

14815

ENSAPLT00000034786

9517546 - 9532204

14659