Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9521817_9521921_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9521817 - 9521921

Intron Length:

105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCA|GTAAGTCCA

5'SS Class:

major

3'SS Sequence:

TCGGGCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAT

U12 Branch Point Sequence:

CCGTGCTGATGC

Flanking Amino Acid:

GSATTLSVRVKSPAVGSVSE

Intron Amino Acid Position:

681

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.9

0.59

1.1

65.7

40.1

Major BPS

76.2

0.65

1.1

65.3

43.7

Major PPT

69.5

0.44

61.7

Minor 5ss

36.7

-1.5

2.9

48.4

41.1

Minor BPS

38.2

-0.9

2.2

42.05

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044325

9517390 - 9532204

14815

ENSAPLT00000034786

9517546 - 9532204

14659