Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9523833_9524082_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9523833 - 9524082

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGGGGT

5'SS Class:

major

3'SS Sequence:

CCACACCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAC

U12 Branch Point Sequence:

GTTCCCACACCC

Flanking Amino Acid:

LGRLGPDGTQVGLATYSYRS

Intron Amino Acid Position:

1089

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.2

41.8

Major BPS

62.4

0.31

1.2

72.4

34.6

Major PPT

0.27

0.9

54.1

30.2

Minor 5ss

27.3

-2.6

3.4

46.2

Minor BPS

-0.3

2.1

62.44

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044325

9517390 - 9532204

14815

ENSAPLT00000034786

9517546 - 9532204

14659