Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9527641_9527826_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9527641 - 9527826

Intron Length:

186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

CTTCGCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGAGAC

U12 Branch Point Sequence:

GCTGCCTGAGAC

Flanking Amino Acid:

PGELGETGEKGDRGAPGPEG

Intron Amino Acid Position:

1509

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

46.7

-0.2

1.2

41.8

39.2

Major PPT

75.1

0.57

0.8

31.5

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

45.4

-0.3

1.9

53.41

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044325

9517390 - 9532204

14815

ENSAPLT00000034786

9517546 - 9532204

14659