Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9528371_9528531_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9528371 - 9528531

Intron Length:

161

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCCCTG

5'SS Class:

weak_major

3'SS Sequence:

CGGTGTGCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

GATGGTGCCACT

Flanking Amino Acid:

TSVASARGEKGDRGFPGPEG

Intron Amino Acid Position:

1571

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.5

0.34

1.3

54.5

49.7

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

65.5

0.35

57.6

43.2

Minor 5ss

45.6

-0.5

3.2

64.4

Minor BPS

32.2

-1.3

2.5

49.25

44.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034786

9517546 - 9532204

14659

ENSAPLT00000044325

9517390 - 9532204

14815