Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9530824_9530930_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9530824 - 9530930

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCAGAG

U12 Branch Point Sequence:

CTCTCCCCACAG

Flanking Amino Acid:

PGKQGDPGRDGLPGLRGEQG

Intron Amino Acid Position:

1833

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

80.9

31.3

Major BPS

44.1

-0.3

1.5

40.4

42.3

Major PPT

74.9

0.56

0.7

68.3

25.5

Minor 5ss

39.4

-1.2

2.7

51.9

37.5

Minor BPS

40.1

-0.8

2.1

45.33

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017276

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044325

9517390 - 9532204

14815

ENSAPLT00000034786

9517546 - 9532204

14659