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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9547618_9549727_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9547618 - 9549727
Intron Length:
2110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATCTTTATTT
Flanking Amino Acid:
KKFDKKDEESGGGSNPFQHL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60
40.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
70.4
0.72
1.5
84.48
36.6

Associated Gene:

Gene:
COPG1
Ensembl Gene ID:
ENSAPLG00000002838
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030315
9547205 - 9566566
19362