Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_9549781_9549937_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9549781 - 9549937

Intron Length:

157

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAACCCT

5'SS Class:

major

3'SS Sequence:

GCTTTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGGTAT

U12 Branch Point Sequence:

GTATCAGCATCC

Flanking Amino Acid:

HLEKSAVLQEARVFNETPIN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

68.7

42.2

Major BPS

56.4

0.16

1.6

57.4

49.1

Major PPT

81.5

0.71

0.9

72.6

42.4

Minor 5ss

39.9

-1.1

3.2

57.5

46.7

Minor BPS

39.3

-0.8

2.4

53.84

43.3

Associated Gene:

Gene:

COPG1

Ensembl Gene ID:

ENSAPLG00000002838

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030315

9547205 - 9566566

19362

ENSAPLT00000002947

9548695 - 9566336

17642